宜博 / lemongraph

Resolves the A-2 assumption with a real `claude --agent planner -p` call
(--permission-mode auto, $0.05) against a deployed target project: the
migrated identity comes through correctly, not the default assistant
persona. Verdict is "部分成立" (partially confirmed), per the criterion
development-plan.md's U-004 line pre-registered for exactly this outcome --
Planner/Validator's SOUL.md migrated almost verbatim, but Coder's SOUL.md
needed real rewriting: the original hardcoded a live Feishu Base API token
(redacted, never committed), strongly bound its task-claiming to
`lark-cli`/Base status vocabulary, and told itself to shell out
`claude --dangerously-skip-permissions` (conflicts directly with 05
§5.3.1's `auto`-mode decision). All three replaced with graphlemon's own
task table / c_org_node_trigger / task.status vocabulary.

Also resolves a second, higher-stakes conflict found while scoping this
Unit: where does `.claude/agents/<org_node>.md` actually live? Architecture
doc §13.1 says graphlemon's own platform repo; 03-C §3.3 and 05 §5.1 (both
core SDD, not the architecture PRD) explicitly say the target project --
matching how Claude Code's --agent flag actually discovers subagents
(relative to invocation cwd). User confirmed 03-C/05 win. Resolved as two
different files, not a contradiction: agents/<org_node>/SOUL.md (+
validator/AGENTS.md) here is the canonical migrated source (01-M 1.9
agent_profile.soul_file_path, a singleton with no target-project
reference); src/agent_profile.py compiles that into the deployable
.claude/agents/<org_node>.md and writes it into a target project via
deploy_agent_definitions(). Does not reopen the U-002 correction from the
previous commit -- .graphlemon/ scaffolding and agent deployment are
different, non-conflicting concerns.

validator's tools/disallowedTools frontmatter encodes qa/AGENTS.md's
original workspace-permission contract (read-only on source, no git
mutation commands) as actual Claude Code permissions instead of prose.

14 new stdlib unittest cases (test_agent_profile.py, all real) + 1 gated
real-agent test (test_agent_e2e.py, RUN_REAL_AGENT_E2E=1, mirrors
graphloop's pattern per CLAUDE.md's Testing constraint -- this is the first
Unit that actually shells out to `claude`, so this is also where that
harness gets built, per the harness-ownership decision from the earlier
"什么还需要" review). 41 total tests across U-001-004, all passing.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

U-003's coverage in unit_matrix.json is empty (no M/V/C/P/REQ) -- its Done
criterion is a property, not a contract: platform dir and any target
project dir stay physically separate, and the raw log directory never
enters graphlemon's own git history. src/paths.py makes the `~/.graphlemon/
logs/...` example path from 01-M 1.13 / architecture doc §13.2 into the
actual convention (GRAPHLEMON_HOME-overridable), defaulting to the user's
home directory so it's outside this repo's checkout by construction rather
than by a .gitignore rule. is_separate_from() is the property U-003 has to
guarantee, tested from both directions (target nested in platform home,
platform home nested in target).

Also fixes a second stale reference to the pre-correction U-002 scope,
found while scoping this Unit: U-036's "supervisor/ directory ownership"
open question in development-plan.md still described U-002 as owning a
`.claude/`/`skills/`/`src/` target-project tree (already corrected out of
U-002 itself last commit). Notes that this makes the open question
moot -- supervisor/ was never a real target-project candidate.

8 new stdlib unittest cases (src/test_paths.py); 31 total across
U-001/U-002/U-003, all passing.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

Implements c_project_create (03-C §3.0) as a plain function for U-007 to
wire up later: idempotent by target_folder_path, creates .graphlemon/ +
one init commit in an existing git repo, PATH_NOT_FOUND/PATH_NOT_WRITABLE/
GIT_INIT_DECLINED per contract, never silently `git init`s (02-V §2.1).

Also corrects a real SDD-vs-plan conflict found while scoping this Unit:
development-plan.md's U-002 line cited architecture doc §7.3's directory
tree (.claude/agents/, skills/, top-level runs/) as what to create inside
a target project. But §13.1 (a later, confirmed decision) states those are
graphlemon's own platform-repo assets (U-003 scope), and 01-M's own
graphlemon_subdir_initialized field already points at §13.2, whose target-
project tree is only .git/ + .graphlemon/ + the target's pre-existing
src/. §7.3 predates the "target project is an independent code space"
pivot and was superseded by it. Corrected development-plan.md,
unit_matrix.json, CLAUDE.md, and 05-实施约束与依赖.md accordingly (user
confirmed, 2026-07-31).

23 stdlib unittest cases (src/test_schema.py + new src/test_project_scaffold.py),
all passing.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

Implements docs/sdd/01-M-模型设计.md §1.0-1.14 as stdlib sqlite3 DDL in src/
(deployment/deploy_health_signal §1.15-1.16 are PH5/U-034, deliberately
excluded). Covers all entities' fields, enum CHECK constraints, FKs, and
the two non-trivial unique indexes (work_graph_run's per-(task_id,org_node)
active-run partial index, artifact's (task_id,artifact_type,git_commit_sha)
composite key).

Per user decision (2026-07-30): bug_record.root_cause_category excludes
'core_engine' for now -- that value is PH5-scoped and development-plan.md
assigns adding it to U-034, not U-001; a test locks this in.

14 stdlib unittest cases in src/test_schema.py cover table creation and the
Done criterion's named constraint classes (unique/FK/enum), all passing.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>

Establishes the first commit for graphlemon before U-001 work begins:
architecture/SDD docs (including the PH5 self-hosting design already
folded into 01-M/03-C/04-P/mvcp-contract v1.7.0), the A-1 spike results,
the graphloop-adapted supervisor/isolation utilities, PH3 wireframe
prototypes (now cross-referenced from 02-V), and this session's
development-plan review (U-024 dependency split, U-035 regression
requirement, new U-004.5 e2e-harness unit, src/ directory convention).

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>